Guidelines regarding the use of pharmacogenomic tests in dosing for clopidogrel have been published in Clinical Pharmacology and Therapeutics by the Clinical Pharmacogenetics Implementation Consortium (CPIC).
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Excerpt from the clopidogrel dosing guidelines:
The table below summaries the therapeutic CPIC guidelines for clopidogrel based on CYP2C19 phenotype for patients with acute coronary syndrome (ACS) and percutaneous coronary intervention (PCI) initiating antiplatelet therapy. These guidelines have been limited to the CYP2C19*2 allele (rs4244285). At the time of writing these guidelines, only the CYP2C19*2 allele has been adequately studied with respect to clinical outcomes on clopidogrel; other variants are too rare, have not been studied, or have resulted in inconclusive findings. In addition to the CYP2C19*2 allele, many clinical genotyping platforms include other variant alleles (*3-*8, *17) that may alter the interpretation of a patient's predicted metabolizer phenotype. For some rare genotype combinations (e.g.*2/*17) metabolic phenotypes are difficult to predict.
Clopidogrel therapy based on CYP2C19 phenotype for ACS/PCI patients initiating antiplatelet therapy:
| Phenotype (Genotype) | Implications for clopidogrel | Therapeutic recommendations | Classification of recommendations |
|---|---|---|---|
| Ultrarapid metabolizer (UM) (*1/*17, *17/*17) and extensive metabolizer (EM) (*1/*1) | Normal (EM) or increased (UM) platelet inhibition; normal (EM) or decreased (UM) residual platelet aggregation 1 | Clopidogrel label-recommended dosage and administration | Strong |
| Intermediate metabolizer (IM) (*1/*2) | Reduced platelet inhibition; increased residual platelet aggregation; increased risk for adverse cardiovascular events | Prasugrel or other alternative therapy (if no contraindication) | Moderate |
| Poor metabolizer (PM) (*2/*2) | Significantly reduced platelet inhibition; increased residual platelet aggregation; increased risk for adverse cardiovascular events | Prasugrel or other alternative therapy (if no contraindication) | Strong |
1 The CYP2C19*17 allele (rs12248560) may be associated with increased risk of bleeding (see article for reference).
An important caveat for all genotyping tests is that the "wild-type" (*1) status is reported if all other alleles that are measured are absent. Some genotype tests do not interrogate the rare loss of function alleles and therefore, if present, they may be erroneously reported as "wild type". Furthermore, in human DNA, it is always possible that a new, previously undiscovered (and therefore un-interrogated) site of variation may confer altered enzyme function in an individual, and thus lead to the rare possibility of a loss-of-function allele being erroneously called as "wild-type" (*1). The guidelines do not focus on demographic and other clinical variables, such as adherence to therapy, age, diabetes mellitus, obesity, smoking, and concomitant use of other drugs that may influence clopidogrel efficacy and clinical decision making; see article.
The Royal Dutch Pharmacists Association - Pharmacogenetics Working Group has evaluated therapeutic dose recommendations for citalopram based on CYP2C19 genotype. They conclude to monitor plasma concentration and titrate dose to a maximum of 150% in response to efficacy and adverse drug event or select alternative drug (e.g. fluoxetine, paroxetine) for the CYP2C19 UM phenotype.
| Phenotype (Genotype) | Therapeutic Dose Recommendation | Level of Evidence | Clinical Relevance |
|---|---|---|---|
| CYP2C19 PM (*2/*2, *2/*3, *3/*3) | None | Published controlled studies of good quality* relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Minor clinical effect (statistically significant difference): QTc prolongation (<450 ms female, <470 ms male); international normalized ratio (INR) increase < 4.5 Kinetic effect (statistically significant difference) |
| CYP2C19 IM (*1/*2, *1/*3, *17/*2, *17/*3) | None | Published controlled studies of good quality* relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Minor clinical effect (statistically significant difference): QTc prolongation (<450 ms female, <470 ms male); INR increase < 4.5 Kinetic effect (statistically significant difference) |
| CYP2C19 UM (*17/*17) | Monitor plasma concentration and titrate dose to a maximum of 150% in response to efficacy and adverse drug event or select alternative drug (e.g. fluoxetine, paroxetine) | Published controlled studies of good quality* relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Minor clinical effect (statistically significant difference): QTc prolongation (<450 ms female, <470 ms male); INR increase < 4.5 Kinetic effect (statistically significant difference) |
- *See Methods or PMID: 18253145 for definition of "good quality."
- Please see attached PDF for detailed information about the evaluated studies: Citalopram CYP2C19
The Royal Dutch Pharmacists Association - Pharmacogenetics Working Group has evaluated therapeutic dose recommendations for clopidogrel based on the CYP2C19 genotype. For the CYP2C19 PM and IM phenotype they conclude an increased risk for reduced response to clopidogrel and recommend to consider an alternative drug. Prasugrel is not or to a much smaller extent metabolized by CYP2C19 but is associated with an increased bleeding risk compared to clopidogrel.
| Phenotype (Genotype) | Therapeutic Dose Recommendation | Level of Evidence | Clinical Relevance |
|---|---|---|---|
| CYP2C19 PM (*2/*2, *2/*3, *3/*3) | Increased risk for reduced response to clopidogrel. Consider alternative drug. Prasugrel is not or to a much smaller extent metabolized by CYP2C19 but is associated with an increased bleeding risk compared to clopidogrel | Published controlled studies of good quality* relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Clinical effect (statistically significant difference): death; arrhythmia; unanticipated myelosuppression |
| CYP2C19 IM (*1/*2, *1/*3, *17/*2, *17/*3) | Increased risk for reduced response to clopidogrel. Consider alternative drug. Prasugrel is not or to a much smaller extent metabolized by CYP2C19 but is associated with an increased bleeding risk compared to clopidogrel | Published controlled studies of good quality* relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Clinical effect (statistically significant difference): death; arrhythmia; unanticipated myelosuppression |
| CYP2C19 UM (*17/*17) | None | Published controlled studies of moderate quality# relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Minor clinical effect (statistically significant difference): QTc prolongation (<450 ms female, <470 ms male); international normalized ratio increase < 4.5 Kinetic effect (statistically significant difference) |
- *See Methods or PMID: 18253145 for definition of "good quality."
- #wherever one or more of the "good quality" criteria was missing, the quality of the study was considered to be "moderate"
The Royal Dutch Pharmacists Association - Pharmacogenetics Working Group has evaluated therapeutic dose recommendations for escitalopram based on the CYP2C19 genotype. They conclude to monitor plasma concentration and titrate dose to a maximum of 150% in response to efficacy and adverse drug event or select alternative drug (e.g. fluoxetine, paroxetine) for the CYP2C19 UM phenotype.
| Phenotype (Genotype) | Therapeutic Dose Recommendation | Level of Evidence | Clinical Relevance |
|---|---|---|---|
| CYP2C19 PM (*2/*2, *2/*3, *3/*3) | None | Published controlled studies of good quality* relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Minor clinical effect (statistically significant difference): QTc prolongation (<450 ms female, <470 ms male); international normalized ratio (INR) increase < 4.5 Kinetic effect (statistically significant difference) |
| CYP2C19 IM (*1/*2, *1/*3, *17/*2, *17/*3) | None | Published controlled studies of good quality* relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Minor clinical effect (statistically significant difference): QTc prolongation (<450 ms female, <470 ms male); INR increase < 4.5 Kinetic effect (statistically significant difference) |
| CYP2C19 UM (*17/*17) | Monitor plasma concentration and titrate dose to a maximum of 150% in response to efficacy and adverse drug event or select alternative drug (e.g. fluoxetine, paroxetine) | Published controlled studies of good quality* relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Minor clinical effect (statistically significant difference): QTc prolongation (<450 ms female, <470 ms male); INR increase < 4.5 Kinetic effect (statistically significant difference) |
- *See Methods or PMID: 18253145 for definition of "good quality."
- Please see attached PDF for detailed information about the evaluated studies: Escitalopram CYP2C19
The Royal Dutch Pharmacists Association - Pharmacogenetics Working Group has evaluated therapeutic dose recommendations for esomeprazole based on CYP2C19 genotype. For the CYP2C19 UM phenotype, they conclude to be extra alert to insufficient response and recommend to consider dose increase by 50-100%.
| Phenotype (Genotype) | Therapeutic Dose Recommendation | Level of Evidence | Clinical Relevance |
|---|---|---|---|
| CYP2C19 PM (*2/*2, *2/*3, *3/*3) | None | Published controlled studies of good quality* relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Positive clinical effects |
| CYP2C19 IM (*1/*2, *1/*3, *17/*2, *17/*3) | None | Published controlled studies of good quality* relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Positive clinical effects |
| CYP2C19 UM (*17/*17) | Helicobacter pylori eradication: increase dose by 50-100%. Be extra alert to insufficient response Other: be extra alert to insufficient response. Consider dose increase by 50-100% | no data was retrieved with the literature search | no data was retrieved with the literature search |
- *See Methods or PMID: 18253145 for definition of "good quality."
The Royal Dutch Pharmacists Association - Pharmacogenetics Working Group has evaluated therapeutic dose recommendations for imipramine based on CYP2C19 genotype.
| Phenotype (Genotype) | Therapeutic Dose Recommendation | Level of Evidence | Clinical Relevance |
|---|---|---|---|
| CYP2C19 PM (*2/*2, *2/*3, *3/*3) | Reduce dose by 30% and monitor plasma concentration of imipramine and desipramine or select alternative drug (e.g. fluvoxamine, mirtazapine) | Published controlled studies of moderate quality# relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Minor clinical effect (statistically significant difference): QTc prolongation (<450 ms female, <470 ms male); international normalized ratio increase < 4.5 Kinetic effect (statistically significant difference) |
| CYP2C19 IM (*1/*2, *1/*3, *17/*2, *17/*3) | Insufficient data to allow calculation of dose adjustment. Select alternative drug (e.g. fluvoxamine, mirtazapine) | Published controlled studies of moderate quality# relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Minor clinical effect (statistically significant difference): QTc prolongation (<450 ms female, <470 ms male); international normalized ratio increase < 4.5 Kinetic effect (statistically significant difference) |
| CYP2C19 UM (*17/*17) | None | no data was retrieved with the literature search | no data was retrieved with the literature search |
- #See Methods or PMID: 18253145 for definition of "moderate" quality.
- Please see attached PDF for detailed information about the evaluated studies: Imipramine CYP2C19
The Royal Dutch Pharmacists Association - Pharmacogenetics Working Group has evaluated therapeutic dose recommendations for lansoprazole based on CYP2C19 genotype. For the CYP2C19 UM phenotype, they conclude to be extra alert to insufficient response and recommend to consider dose increase by 200%.
| Phenotype (Genotype) | Therapeutic Dose Recommendation | Level of Evidence | Clinical Relevance |
|---|---|---|---|
| CYP2C19 PM (*2/*2, *2/*3, *3/*3) | None | Published controlled studies of good quality* relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Positive clinical effects |
| CYP2C19 IM (*1/*2, *1/*3, *17/*2, *17/*3) | None | Published controlled studies of good quality* relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Positive clinical effects |
| CYP2C19 UM (*17/*17) | Helicobacter pylori eradication: increase dose by 200%. Be extra alert to insufficient response Other: be extra alert to insufficient response. Consider dose increase by 200% | no data was retrieved with the literature search | no data was retrieved with the literature search |
- *See Methods or PMID: 18253145 for definition of "good quality."
The Royal Dutch Pharmacists Association - Pharmacogenetics Working Group has evaluated therapeutic dose recommendations for moclobemide based on CYP2C19 genotype. They conclude that there are no recommendations at this time.
| Phenotype (Genotype) | Therapeutic Dose Recommendation | Level of Evidence | Clinical Relevance |
|---|---|---|---|
| CYP2C19 PM (*2/*2, *2/*3, *3/*3) | None | Published controlled studies of moderate quality# relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Minor clinical effect (statistically significant difference): QTc prolongation (<450 ms female, <470 ms male); international normalized ratio increase < 4.5 Kinetic effect (statistically significant difference) |
| CYP2C19 IM (*1/*2, *1/*3, *17/*2, *17/*3) | None | no data was retrieved with the literature search | no data was retrieved with the literature search |
| CYP2C19 UM (*17/*17) | None | no data was retrieved with the literature search | no data was retrieved with the literature search |
- #See Methods or PMID: 18253145 for definition of "moderate" quality.
The Royal Dutch Pharmacists Association - Pharmacogenetics Working Group has evaluated therapeutic dose recommendations for omeprazole based on CYP2C19 genotype. For the CYP2C19 UM phenotype, they conclude to be extra alert to insufficient response and recommend to consider dose increase by 100-200%.
| Phenotype (Genotype) | Therapeutic Dose Recommendation | Level of Evidence | Clinical Relevance |
|---|---|---|---|
| CYP2C19 PM (*2/*2, *2/*3, *3/*3) | None | Published controlled studies of good quality* relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Positive clinical effects |
| CYP2C19 IM (*1/*2, *1/*3, *17/*2, *17/*3) | None | Published controlled studies of good quality* relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Positive clinical effects |
| CYP2C19 UM (*17/*17) | Helicobacter pylori eradication: increase dose by 100-200%. Be extra alert to insufficient response Other: be extra alert to insufficient response. Consider dose increase by 100-200% | Published controlled studies of moderate quality# relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Minor clinical effect (statistically significant difference): QTc prolongation (<450 ms female, <470 ms male); international normalized ratio increase < 4.5 Kinetic effect (statistically significant difference) |
- * and # See Methods or PMID: 18253145 for definition of "good" and "moderate" quality.
- Please see attached PDF for detailed information about the evaluated studies: Omeprazole CYP2C19
The Royal Dutch Pharmacists Association - Pharmacogenetics Working Group has evaluated therapeutic dose recommendations for pantoprazole based on CYP2C19 genotype. For the CYP2C19 UM phenotype, they conclude to be extra alert to insufficient response and recommend to consider dose increase by 400%.
| Phenotype (Genotype) | Therapeutic Dose Recommendation | Level of Evidence | Clinical Relevance |
|---|---|---|---|
| CYP2C19 PM (*2/*2, *2/*3, *3/*3) | None | Published controlled studies of moderate quality# relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Positive clinical effects |
| CYP2C19 IM (*1/*2, *1/*3, *17/*2, *17/*3) | None | Published controlled studies of moderate quality# relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Positive clinical effects |
| CYP2C19 UM (*17/*17) | Helicobacter pylori eradication: increase dose by 400%. Be extra alert to insufficient response Other: be extra alert to insufficient response. Consider dose increase by 400% | Published controlled studies of moderate quality# relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Clinical effect (not statistically significant difference); Kinetic effect (not statistically significant difference) |
- #See Methods or PMID: 18253145 for definition of "moderate" quality.
The Royal Dutch Pharmacists Association - Pharmacogenetics Working Group has evaluated therapeutic dose recommendations for rabeprazole based on CYP2C19 genotype. They conclude that there are no recommendations at this time.
| Phenotype (Genotype) | Therapeutic Dose Recommendation | Level of Evidence | Clinical Relevance |
|---|---|---|---|
| CYP2C19 PM (*2/*2, *2/*3, *3/*3) | None | Published controlled studies of good quality* relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Positive clinical effects |
| CYP2C19 IM (*1/*2, *1/*3, *17/*2, *17/*3) | None | Published controlled studies of good quality* relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Clinical effect (not statistically significant difference); Kinetic effect (not statistically significant difference) |
| CYP2C19 UM (*17/*17) | None | no data was retrieved with the literature search | no data was retrieved with the literature search |
- *See Methods or PMID: 18253145 for definition of "good quality."
The Royal Dutch Pharmacists Association - Pharmacogenetics Working Group has evaluated therapeutic dose recommendations for sertraline based on CYP2C19 genotype.
| Phenotype (Genotype) | Therapeutic Dose Recommendation | Level of Evidence | Clinical Relevance |
|---|---|---|---|
| CYP2C19 PM (*2/*2, *2/*3, *3/*3) | Reduce dose by 50% | Published controlled studies of moderate quality# relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Clinical effect (statistically significant difference): long-standing discomfort (48-168 hr) without permanent injury e.g. failure of therapy with tricyclic antidepressants, atypical antipsychotic drugs; extrapyramidal side effects; parkinsonism; adverse drug events resulting from increased bioavailability of tricyclic antidepressants, metoprolol, propafenone (central effects e.g. dizziness); international normalized ratio 4.5-6.0; neutropenia 1.0-1.5x109/l; leucopenia 2.0-3.0x109/l; thrombocytopenia 50-75x109/l |
| CYP2C19 IM (*1/*2, *1/*3, *17/*2, *17/*3) | Insufficient data to allow calculation of dose adjustment. Be extra alert to adverse drug events (e.g., nausea, vomiting, diarrhea) | Published controlled studies of moderate quality# relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Minor clinical effect (statistically significant difference): QTc prolongation (<450 ms female, <470 ms male); international normalized ratio increase < 4.5 Kinetic effect (statistically significant difference) |
| CYP2C19 UM (*17/*17) | None | no data was retrieved with the literature search | no data was retrieved with the literature search |
- *See Methods or PMID: 18253145 for definition of "moderate" quality.
- Please see attached PDF for detailed information about the evaluated studies: Sertraline CYP2C19
The Royal Dutch Pharmacists Association - Pharmacogenetics Working Group has evaluated therapeutic dose recommendations for voriconazole based on CYP2C19 genotype. They conclude to monitor serum concentration for patients carrying the CYP2C19 PM or IM phenotype.
| Phenotype (Genotype) | Therapeutic Dose Recommendation | Level of Evidence | Clinical Relevance |
|---|---|---|---|
| CYP2C19 PM (*2/*2, *2/*3, *3/*3) | Monitor serum concentration | Published controlled studies of moderate quality# relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Minor clinical effect (statistically significant difference): QTc prolongation (<450 ms female, <470 ms male); international normalized ratio increase < 4.5 Kinetic effect (statistically significant difference) |
| CYP2C19 IM (*1/*2, *1/*3, *17/*2, *17/*3) | Monitor serum concentration | Published controlled studies of moderate quality# relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Minor clinical effect (statistically significant difference): QTc prolongation (<450 ms female, <470 ms male); international normalized ratio increase < 4.5 Kinetic effect (statistically significant difference) |
| CYP2C19 UM (*17/*17) | None | Published controlled studies of moderate quality# relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints | Minor clinical effect (statistically significant difference): QTc prolongation (<450 ms female, <470 ms male); international normalized ratio increase < 4.5 Kinetic effect (statistically significant difference) |
- *See Methods or PMID: 18253145 for definition of "moderate" quality.
Information regarding PGx on FDA drug labels is derived from the FDA's Table of Pharmacogenomic Biomarkers in Drug Labels. Excerpts from the label and downloadable highlighted label PDFs are manually curated by PharmGKB
The FDA recommends, but does not require, genetic testing prior to initiating or reinitiating treatment with Carisoprodol.
Excerpt from the Carisoprodol drug label:
"Patients with Reduced CYP2C19 Activity: Carisoprodol should be used with caution in patients with reduced CYP2C19 activity. Published studies indicate that patients who are poor CYP2C19 metabolizers have a 4-fold increase in exposure to carisoprodol, and concomitant 50% reduced exposure to meprobamate compared to normal CYP2C19 metabolizers. The prevalence of poor metabolizers in Caucasians and African Americans is approximately 3-5% and in Asians is approximately 15-20%."
For the complete drug label text with sections containing pharmacogenetic information highlighted, see the Carisoprodol drug label PDF.
The clopidogrel label highlights the pharmacogenetics of this drug.
Excerpt from the clopidogrel drug label:
The effectiveness of Plavix is dependent on its activation to an active metabolite by the cytochrome P450 (CYP) system, principally CYP2C19 [see Warnings and Precautions (5.1)]. Plavix at recommended doses forms less of that metabolite and has a smaller effect on platelet function in patients who are CYP2C19 poor metabolizers. Poor metabolizers with acute coronary syndrome or undergoing percutaneous coronary intervention treated with Plavix at recommended doses exhibit higher cardiovascular event rates than do patients with normal CYP2C19 function. Tests are available to identify a patient's CYP2C19 genotype; these tests can be used as an aid in determining therapeutic strategy [see Clinical Pharmacology (12.5)]. Consider alternate treatment or treatment strategies in patients identified as CYP2C19 poor metabolizers [see Dosage and Administration (2.3)].
Twenty-one studies involving 4,520 subjects have shown that CYP2C19*2, CYP2C19*3, and other CYP2C19 loss-of-function alleles are associated with diminished antiplatelet responses to treatment with clopidogrel. CYP2C19 participates in the formation of both the active metabolite of clopidogrel and the 2-oxo-clopidogrel intermediate metabolite. Individuals with CYP2C19 loss-of-function alleles have reduced exposure to the active metabolite of clopidogrel, leading to less platelet inhibition or higher residual platelet reactivity. Key publications on pharmacogenetic studies of response to clopidogrel include: [Article:19106083, 19106084, 19108880, 19193675@PubMed].
For the complete drug label text with sections containing pharmacogenetic information highlighted, see the clopidogrel drug label, updated 3/2010.
Diazepam is used mainly for treatment of anxiety and anxiety disorders and also for treatment of other issues including seizures, muscle spasms and irritable bowel syndrome. CYP2C19 is involved in its metabolism.
Excerpts from the Diazepam drug label:
"Diazepam is N-demethylated by CYP3A4 and 2C19 to the active metabolite N-desmethyldiazepam, and is hydroxylated by CYP3A4 to the active metabolite temazepam."
"There is a potentially relevant interaction between diazepam and compounds which inhibit certain hepatic enzymes (particularly
cytochrome P450 3A and 2C19."
For the complete drug label text with sections containing pharmacogenetic information highlighted, see the Diazepam drug label.
*Disclaimer: The contents of this page have not been endorsed by the FDA and are the sole responsibility of PharmGKB.
Esomeprazole is a proton pump inhibitor and entantiomer of omeprazole. It is metabolized in the liver by CYP2C19 and CYP3A4 (see Proton Pump Inhibitor Pathway).
The FDA recommends, but does not require, genetic testing prior to initiating or reinitiating treatment with esomeprazole.
Excerpt from the esomeprazole (Nexium) drug label:
"Esomeprazole may potentially interfere with CYP 2C19, the major esomeprazole metabolizing enzyme. Coadministration of esomeprazole 30 mg and diazepam, a CYP 2C19 substrate, resulted in a 45% decrease in clearance of diazepam. Concomitant administration of esomeprazole and a combined inhibitor of CYP 2C19 and CYP 3A4, such as voriconazole, may result in more than doubling of the esomeprazole exposure. Dose adjustment of esomeprazole is not normally required."
"CYP 2C19 isoenzyme exhibits polymorphism in the metabolism of esomeprazole, since some 3% of Caucasians and 15 to 20% of Asians lack CYP 2C19 and are termed Poor Metabolizers. At steady state, the ratio of AUC in Poor Metabolizers to AUC in the rest of the population (Extensive Metabolizers) is approximately 2."
For the complete drug label text with sections containing pharmacogenetic information highlighted, see the esomeprazole (Nexium) drug label.
*Disclaimer: The contents of this page have not been endorsed by the FDA and are the sole responsibility of PharmGKB.
Rabeprazole is a proton-pump inhibitor used for treatment of Erosive or Ulcerative Gastroesophageal Reflux Disease (GERD). CYP2C19 poor metabolizer genotypes may have lower suppression of gastric acid as compared to more extensive metabolizers.
Excerpts from the rabeprazole drug label:
"In a clinical study in Japan evaluating rabeprazole in patients categorized by CYP2C19 genotype (n=6 per genotype category), gastric acid suppression was higher in poor metabolizers as compared to extensive metabolizers. This could be due to higher rabeprazole plasma levels in poor metabolizers."
"CYP2C19 exhibits a known genetic polymorphism due to its deficiency in some sub-populations (e.g. 3 to 5% of Caucasians and 17 to 20% of Asians). Rabeprazole metabolism is slow in these sub-populations, therefore, they are referred to as poor metabolizers of the drug."
For the complete drug label text with sections containing pharmacogenetic information highlighted, see the Rabeprazole drug label.
*Disclaimer: The contents of this page have not been endorsed by the FDA and are the sole responsibility of PharmGKB.
Voriconazole is an antifungal used to treat serious infections of Aspergillus fumigatu, Candida, Scedosporium, Fusarium and other species. Voriconazole is metabolized in the liver by CYP2C19, CYP2C9 and CYP3A4. It also influences expression of metabolizing enzymes and interacts with several other drugs.
The FDA recommends, but does not require, genetic testing prior to initiating or reinitiating treatment with Voriconazole.
Excerpt from the Voriconazole (VFEND) drug label:
"Inhibitors and inducers of CYP3A4, CYP2C9, and CYP2C19 may alter VFEND concentrations. Adjust the VFEND dose and monitor for adverse events or lack of efficacy."
"VFEND may increase the concentrations and activity of drugs that are CYP3A4, CYP2C9 and CYP2C19 substrates. Reduce doses of and monitor for lack of efficacy or adverse events associated with drugs that are substrates of these enzymes."
"In vivo studies indicated that CYP2C19 is significantly involved in the metabolism of voriconazole. This enzyme exhibits genetic polymorphism. For example, 1520% of Asian populations may be expected to be poor metabolizers. For Caucasians and Blacks, the prevalence of poor metabolizers is 35%. Studies conducted in Caucasian and Japanese healthy subjects have shown that poor metabolizers have, on average, 4-fold higher voriconazole exposure (AUCt) than their homozygous extensive metabolizer counterparts. Subjects who are heterozygous extensive metabolizers have, on average, 2-fold higher voriconazole exposure than their homozygous extensive metabolizer counterparts."
For the complete drug label text with sections containing pharmacogenetic information highlighted, see the Voriconazole drug label.
*Disclaimer: The contents of this page have not been endorsed by the FDA and are the sole responsibility of PharmGKB.
Drospirenone and ethinyl estradiol (Yasmin) is a combined oral contraceptive drug.
The FDA recommends, but does not require, genetic testing prior to initiating or reinitiating treatment with drospirenone and ethinyl estradiol.
Excerpt from the drospirenone and ethinyl estradiol (Yasmin) drug label:
"In in vitro studies DRSP did not affect turnover of model substrates of CYP1A2 and CYP2D6, but had an inhibitory influence on the turnover of model substrates of CYP1A1, CYP2C9, CYP2C19 and CYP3A4 with CYP2C19 being the most sensitive enzyme."
"The potential effect of DRSP on CYP2C19 activity was investigated in a clinical pharmacokinetic study using omeprazole as a marker substrate. In the study with 24 postmenopausal women including 12 women with homozygous (wild type) CYP2C19 genotype and 12 women with heterozygous CYP2C19 genotype the daily oral administration of 3 mg DRSP for 14 days did not affect the oral clearance of omeprazole (40 mg, single oral dose). Based on the available results of in vivo and in vitro studies it can be concluded that, at clinical dose level, DRSP shows little propensity to interact to a significant extent with cytochrome P450 enzymes."
For the complete drug label text with sections containing pharmacogenetic information highlighted, see the Drospirenone and ethinyl estradiol (Yasmin) drug label.
*Disclaimer: The contents of this page have not been endorsed by the FDA and are the sole responsibility of PharmGKB.
Nelfinavir is a protease inhibitor which is used in combination with other medications to treat human immunodeficiency virus (HIV) infection by slowing the spread of the infection within the body. It is metabolized by cytochrome P-450 enzymes, mainly CYP3A and CYP2C19.
Excerpts from the Nelfinavir drug label:
"Nelfinavir is an inhibitor of the CYP3A enzyme. Coadministration of VIRACEPT and drugs primarily metabolized by CYP3A may result in increased plasma concentrations of the other drug that could prolong its therapeutic and adverse effects."
"Nelfinavir is metabolized by CYP3A and CYP2C19. Coadministration of VIRACEPT and drugs that induce CYP3A or CYP2C19 may decrease nelfinavir plasma concentrations and reduce its therapeutic effect. Coadministration of VIRACEPT and drugs that inhibit CYP3A or CYP2C19 may increase nelfinavir plasma concentrations."
For the complete drug label text with sections containing pharmacogenetic information highlighted, see the Nelfinavir drug label.
*Disclaimer: The contents of this page have not been endorsed by the FDA and are the sole responsibility of PharmGKB.
Clinical Variants that meet the highest level of criteria, manually curated by PharmGKB, are shown below. Please follow the link in the "Position" column for more information about a particular variant. Each link in the "Position" column leads to the corresponding PharmGKB Variant Page. The Variant Page contains summary data, including PharmGKB manually curated information about variant-drug pairs based on individual PubMed publications. The PMIDs for these PubMed publications can be found on the Variant Page.
To see more Clinical Variants with lower levels of criteria, click the button at the bottom of the table.
| Position ? | Drug ? | Relevance ? |
Strength of Evidence ? |
||
|---|---|---|---|---|---|
| rs12248560 | clopidogrel more likely to cause bleeding | 1 | |||
| rs4244285 | clopidogrel dose above average | 1 | |||
Download a summary of all Clinical Annotations available.
Disclaimer: The PharmGKB's clinical annotations reflect expert consensus based on clinical evidence and peer-reviewed literature available at the time they are written and are intended only to assist clinicians in decision-making and to identify questions for further research. New evidence may have emerged since the time an annotation was submitted to the PharmGKB. The annotations are limited in scope and are not applicable to interventions or diseases that are not specifically identified.
The annotations do not account for individual variations among patients, and cannot be considered inclusive of all proper methods of care or exclusive of other treatments. It remains the responsibility of the health-care provider to determine the best course of treatment for a patient. Adherence to any guideline is voluntary, with the ultimate determination regarding its application to be made solely by the clinician and the patient. PharmGKB assumes no responsibility for any injury or damage to persons or property arising out of or related to any use of the PharmGKB clinical annotations, or for any errors or omissions.
A non-comprehensive list of genetic tests for specific variants, including descriptions of and links to individual tests; manually curated by PharmGKB. The information listed is provided for educational purposes only and does not constitute an endorsement of any listed test or manufacturer.
| PGx Test | Variants Assayed | Related Drugs? |
|---|---|---|
| Roche AmpliChip CYP450 Test and Affymetrix GeneChip System 3000Dx | rs11188072 | |
| Infiniti CYP450 2C19 | rs11188072 |
The table below contains information about pharmacogenomic variants on PharmGKB. Please follow the link in the "Variant" column for more information about a particular variant. Each link in the "Variant" column leads to the corresponding PharmGKB Variant Page. The Variant Page contains summary data, including PharmGKB manually curated information about variant-drug pairs based on individual PubMed publications. The PMIDs for these PubMed publications can be found on the Variant Page.
The tags in the first column of the table indicate what type of information can be found on the corresponding Variant Page.
Links in the "Drugs" column lead to PharmGKB Drug Pages.
|
Variant?
(build 132) |
Alternate Names ? | Drugs ? |
Alleles
?
(+ chr strand) |
Function ? |
Amino Acid?
Translation |
|
|---|---|---|---|---|---|---|
| rs11188072 | -3402, CYP2C19:, CYP2C19: -3402C>T, g.1599C>T, g.47323525C>T, part of CYP2C19*17 | C/T | Not Available | |||
| rs12248560 | CYP2C19*17, CYP2C19*17 CYP2C19: -806C>T, CYP2C19: -806C>T, g.4195C>A, g.4195C>T, g.47326121C>A, g.47326121C>T | A/C/T | 5' Flanking | |||
| rs12768009 | A/G | Intronic | ||||
| rs17884712 | CYP2C19:431G>A, R144H, c.431G>A, g.17784G>A, g.47339710G>A, p.Arg144His | G > A | Missense | Arg144His | ||
| rs28399504 | 1A>G, 80161A>G, 99C>T, CYP2C19*4, CYP2C19:A1G, c.1A>G, g.47326927A>G, g.5001A>G, g.96512453A>G | A > G | Missense | Met1Val | ||
| rs41291556 | 12711T>C, CYP2C19:358T>C, T358C, W120R, c.358T>C, g.17711T>C, g.47339637T>C, p.Trp120Arg | T > C | Missense | Trp120Arg | ||
| rs4244285 | CYP2C19*2, CYP2C19:681G>A, CYP2C19:G681A, c.681G>A, c.681G>C, g.24154G>A, g.24154G>C, g.47346080G>A, g.47346080G>C | G > A/C | Synonymous | Pro227Pro | ||
| rs4986893 | CYP2C19*3, CYP2C19:636G>A, CYP2C19:G636A, c.636G>A, g.22948G>A, g.47344874G>A, p.Trp212X | G > A | Stop Codon | Trp212Xaa | ||
| rs56337013 | CYP2C19:1297C>T, R433W, c.1297C>T, g.47416959C>T, g.95033C>T, p.Arg433Trp | C > T | Not Available | Arg433Trp | ||
| rs6413438 | 19153C>T, CYP2C19:680C>T, P227L, c.680C>T, g.24153C>T, g.47346079C>T, p.Pro227Leu | C > T | Missense | Pro227Leu |
Overview
| Alternate Names: | (R)-limonene 6-monooxygenase; (S)-limonene 6-monooxygenase; (S)-limonene 7-monooxygenase; CYPIIC17; CYPIIC19; OTTHUMP00000020132; OTTHUMP00000059588; S-mephenytoin 4-hydroxylase; cytochrome P-450 II C; cytochrome P450 2C19; cytochrome P450, subfamily IIC (mephenytoin 4-hydroxylase), polypeptide 19; cytochrome P450-11A; cytochrome P450-254C; cytochrome p450; flavoprotein-linked monooxygenase; mephenytoin 4'-hydroxylase; mephenytoin 4-hydroxylase; microsomal monooxygenase; xenobiotic monooxygenase |
|---|---|
| Alternate Symbols:  | CPCJ; CYP 2C; CYP2C; P450C2C; P450IIC19 |
| Haplotypes: | CYP2C19*1A; CYP2C19*1B; CYP2C19*1C; CYP2C19*2A; CYP2C19*2B; CYP2C19*2C; CYP2C19*2D; CYP2C19*3A; CYP2C19*3B; CYP2C19*4A; CYP2C19*4B; CYP2C19*5A; CYP2C19*5B; CYP2C19*6; CYP2C19*7; CYP2C19*8; CYP2C19*9; CYP2C19*10; CYP2C19*11; CYP2C19*12; CYP2C19*13; CYP2C19*14; CYP2C19*15; CYP2C19*16; CYP2C19*17; CYP2C19*18; CYP2C19*19; CYP2C19*22; CYP2C19*23; CYP2C19*24; CYP2C19*25; CYP2C19*26; CYP2C19*27 |
| PharmGKB Accession Id: | PA124 |
Details
| Cytogenetic Location: | chr10 : q23.33 - q23.33 |
|---|---|
| GP mRNA Boundary†: | chr10 : 96522463 - 96612671 |
| GP Gene Boundary†: | chr10 : 96512463 - 96615671 |
| Strand: | plus |
| Product Name: | No data available |
All alleles are displayed on the positive chromosomal strand.
| Haplotype | rs11188072 | rs11568732 | rs118203756 | rs118203757 | rs118203759 | rs12248560 | rs12571421 | rs12769205 | rs17878459 | rs17878649 | rs17879685 | rs17879992 | rs17882687 | rs17884712 | rs17884832 | rs17885098 | rs17886522 | rs28399504 | rs28399513 | rs3758580 | rs3758581 | rs41291556 | rs4244285 | rs4417205 | rs4917623 | rs4986893 | rs4986894 | rs55640102 | rs55752064 | rs56337013 | rs58973490 | rs6413438 | rs7088784 | rs72552267 | rs72558186 | rs7902257 | rs7916649 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CYP2C19*1A | C | T | G | G | C | C | A | A | G | G | C | T | A | G | T | C | A | A | T | C | G | T | G | C | T | G | T | A | T | C | G | C | A | G | T | G | G |
| CYP2C19*1B | C | T | G | G | C | C | A | A | G | G | C | T | A | G | T | T | A | A | T | C | G | T | G | C | T | G | T | A | T | C | G | C | A | G | T | G | G |
| CYP2C19*1C | C | T | G | G | C | C | A | A | G | G | C | T | A | G | T | C | A | A | T | C | G | T | G | C | T | G | T | A | T | C | G | C | A | G | T | G | G |
| CYP2C19*2A | C | T | G | G | C | C | A | A | G | G | C | T | A | G | T | T | A | A | T | T | G | T | A | C | T | G | T | A | T | C | G | C | A | G | T | G | G |
| CYP2C19*2B | C | T | G | G | C | C | A | A | C | G | C | T | A | G | T | T | A | A | T | T | G | T | A | C | T | G | T | A | T | C | G | C | A | G | T | G | G |
| CYP2C19*2C | C | T | G | G | C | C | G | G | G | G | C | T | A | G | T | T | A | A | A | T | G | T | A | G | T | G | C | A | T | C | G | C | A | G | T | G | A |
| CYP2C19*2D | C | T | G | G | C | C | A | G | G | G | C | T | A | G | T | T | A | A | T | T | G | T | A | G | T | G | C | A | T | C | G | C | A | G | T | G | G |
| CYP2C19*3A | C | T | G | G | C | C | A | A | G | G | C | T | A | G | T | C | C | A | T | C | G | T | G | C | T | A | T | A | T | C | G | C | A | G | T | G | G |
| CYP2C19*3B | C | G | G | G | C | C | A | A | G | A | C | C | A | G | G | C | C | A | T | C | G | T | G | C | T | A | T | A | T | C | G | C | G | G | T | G | A |
| CYP2C19*4A | C | T | G | G | C | C | A | A | G | G | C | T | A | G | T | T | A | G | T | C | G | T | G | C | T | G | T | A | T | C | G | C | A | G | T | G | G |
| CYP2C19*4B | C | T | G | G | C | T | A | A | G | G | C | T | A | G | T | T | A | G | T | C | G | T | G | C | T | G | T | A | T | C | G | C | A | G | T | G | G |
| CYP2C19*5A | C | T | G | G | C | C | A | A | G | G | C | T | A | G | T | C | A | A | T | C | A | T | G | C | T | G | T | A | T | T | G | C | A | G | T | G | G |
| CYP2C19*5B | C | T | G | G | C | C | A | A | G | G | C | T | A | G | T | T | A | A | T | C | G | T | G | C | T | G | T | A | T | T | G | C | A | G | T | G | G |
| CYP2C19*6 | C | T | G | G | C | C | A | A | G | G | C | T | A | G | T | T | A | A | T | C | G | T | G | C | T | G | T | A | T | C | G | C | A | A | T | G | G |
| CYP2C19*7 | C | T | G | G | C | C | A | A | G | G | C | T | A | G | T | C | A | A | T | C | A | T | G | C | T | G | T | A | T | C | G | C | A | G | A | G | G |
| CYP2C19*8 | C | T | G | G | C | C | A | A | G | G | C | T | A | G | T | C | A | A | T | C | A | C | G | C | T | G | T | A | T | C | G | C | A | G | T | G | G |
| CYP2C19*9 | C | T | G | G | C | C | A | A | G | G | C | T | A | A | T | T | A | A | T | C | G | T | G | C | T | G | T | A | T | C | G | C | A | G | T | G | G |
| CYP2C19*10 | C | T | G | G | C | C | A | A | G | G | C | T | A | G | T | T | A | A | T | C | G | T | G | C | T | G | T | A | T | C | G | T | A | G | T | G | G |
| CYP2C19*11 | C | T | G | G | C | C | A | A | G | G | C | T | A | G | T | T | A | A | T | C | G | T | G | C | T | G | T | A | T | C | A | C | A | G | T | G | G |
| CYP2C19*12 | C | T | G | G | C | C | A | A | G | G | C | T | A | G | T | T | A | A | T | C | G | T | G | C | T | G | T | C | T | C | G | C | A | G | T | G | G |
| CYP2C19*13 | C | T | G | G | C | C | A | A | G | G | T | T | A | G | T | C | A | A | T | C | G | T | G | C | T | G | T | A | T | C | G | C | A | G | T | G | G |
| CYP2C19*14 | C | T | G | G | C | C | A | A | G | G | C | T | A | G | T | T | A | A | T | C | G | T | G | C | T | G | T | A | C | C | G | C | A | G | T | G | G |
| CYP2C19*15 | C | T | G | G | C | C | A | A | G | G | C | T | C | G | T | C | A | A | T | C | G | T | G | C | T | G | T | A | T | C | G | C | A | G | T | G | G |
| CYP2C19*16 | C | T | G | G | C | C | A | A | G | G | C | T | A | G | T | C | A | A | T | C | A | T | G | C | T | G | T | A | T | C | G | C | A | G | T | G | G |
| CYP2C19*17 | T | T | G | G | C | T | A | A | G | G | C | T | A | G | T | T | A | A | T | C | G | T | G | C | T | G | T | A | T | C | G | C | A | G | T | G | G |
| CYP2C19*18 | C | T | G | G | C | C | A | A | G | G | C | T | A | G | T | T | A | A | T | C | G | T | G | C | C | G | T | A | T | C | G | C | A | G | T | G | G |
| CYP2C19*19 | C | T | G | G | C | C | A | A | G | G | C | T | A | G | T | T | A | A | T | C | G | T | G | C | C | G | T | A | T | C | G | C | A | G | T | G | G |
| CYP2C19*22 | C | T | G | G | C | C | A | A | G | G | C | T | A | G | T | C | A | A | T | C | G | T | G | C | T | G | T | A | T | C | G | C | A | G | T | G | G |
| CYP2C19*23 | C | T | C | G | C | C | A | A | G | G | C | T | A | G | T | T | A | A | T | C | G | T | G | C | T | G | T | A | T | C | G | C | A | G | T | G | G |
| CYP2C19*24 | C | T | G | A | C | C | A | A | G | G | C | T | A | G | T | T | A | A | T | C | G | T | G | C | T | G | T | A | T | C | G | C | A | G | T | G | G |
| CYP2C19*25 | C | T | G | G | G | C | A | A | G | G | C | T | A | G | T | T | A | A | T | C | G | T | G | C | T | G | T | A | T | C | G | C | A | G | T | G | G |
| CYP2C19*26 | C | T | G | G | C | C | A | A | G | G | C | T | A | G | T | T | A | A | T | C | G | T | G | C | T | G | T | A | T | C | G | C | A | G | T | G | G |
| CYP2C19*27 | C | T | G | G | C | C | A | A | G | G | C | T | A | G | T | C | A | A | T | C | G | T | G | C | T | G | T | A | T | C | G | C | A | G | T | A | G |
PharmGKB Curated Pathways
Pathways created internally by PharmGKB based primarily on literature evidence.
-
Atorvastatin/Lovastatin/Simvastatin Pathway, Pharmacokinetics
Drug-specific representation of the candidate genes involved in transport, metabolism and clearance.
-
Carbamazepine Pathway, Pharmacokinetics
Stylized liver cell depicting candidate genes involved in the pharmacokinetics of carbamazepine.
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Citalopram Pathway, Pharmacokinetics
Pharmacokinetics of the selective serotonin reuptake inhibitor citalopram.
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Clopidogrel Pathway, Pharmacokinetics
Clopidogrel metabolism.
-
Cyclophosphamide Pathway, Pharmacokinetics
Model human liver cell showing genes involved in the metabolism of cyclophosphamide.
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Fluoxetine Pathway, Pharmacokinetics
Representation of the candidate genes involved in the metabolism of fluoxetine.
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Fluvastatin Pathway, Pharmacokinetics
Drug-specific representation of the candidate genes involved in transport, metabolism and clearance.
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Gefitinib Pathway, Pharmacokinetics
Representation of the candidate genes involved in the transportation and metabolism of gefitinib.
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Imipramine/Desipramine Pathway, Pharmacokinetics
Representation of the candidate genes involved in the metabolism of the tricyclic antidepressants imipramine and desipramine.
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Phenytoin Pathway, Pharmacokinetics
Genes involved in the metabolism of phenytoin in the human liver cell.
-
Proton Pump Inhibitor Pathway, Pharmacokinetics
Omeprazole metabolism in the liver.
-
Statin Pathway - Generalized, Pharmacokinetics
Representation of the superset of all genes involved in the transport, metabolism and clearance of statin class drugs.
-
Tamoxifen Pathway, Pharmacokinetics
Tamoxifen metabolism in the liver.
-
Warfarin Pathway, Pharmacokinetics
Representation of the candidate genes involved in transport, metabolism and clearance of warfarin.
External Pathways
Links to non-PharmGKB pathways.
Datasets
- Meperidine N-demethylation by endogenous CYP450 enzymes in human liver microsomes
- Meperidine N-demethylation by human CYP450 isoforms
- Patient responses to tamoxifen
- A chemogenomic approach to drug discovery: focus on cardiovascular diseases
- Genetic Variants in Tricyclic Antidepressant associated Adverse Events
- P450s involved in Efavirenz Metabolism
LinkOuts
- Web Resource:
- http://www.imm.ki.se/CYPalleles/cyp2c19.htm
- UniProtKB:
- CP2CJ_HUMAN (P33261)
- Ensembl:
- ENSG00000165841
- GenAtlas:
- CYP2C19
- GeneCard:
- GC10P096512 (1557)
- SOURCE:
- CYP2C19
Common Searches
Non-Curated Publications
A list of non-curated publications that mention this gene is available.
















