Downloads and Web Services

Downloads / PharmGKB Accession Ids

• Genes: genes.zip (1 MB, last updated on 3/6/10)
• Gene Sequence Data
• Drugs: drugs.zip (241 KB, last updated on 3/6/10)
• Diseases: diseases.zip (169 KB, last updated on 3/6/10)
• Relationships: relationships.zip (117 KB, last updated on 3/6/10)
• Variant Annotations: variantAnnotations.zip (228 KB, last updated on 3/6/10)
• Pathways (in BioPAX format): pathways.zip (851 KB, last updated on 1/6/10)
• Coriell Samples: coriell.zip (22 KB, last updated on 3/6/10)
• Anonymous PDR Samples [text] [excel]

If you are interested in an XML dump of the PharmGKB database, this can also be arranged. Please contact us for details.

Web Services

A selected subset of data from PharmGKB is accessible via a SOAP interface:

1. Search Service
   • WSDL
   • API
2. Variant Cross-Reference Service
   • WSDL
   • API
3. PharmGKB Data Service
   • WSDL
   • API

Sample client code is available:

• Perl (client v1.4)
  • Download client
  • View documentation