PharmGKB Data Web Service

The PharmGKB data service retrieves data from PharmGKB given a PharmGKB Accession Id. The WSDL for this service is available here.

Available Methods

searchGene (
  PharmGKB accession # (string)
)

searchDrug (
  PharmGKB accession #
)

searchDisease (
  PharmGKB accession #
)

searchPublication (
  PharmGKB accession #
)

searchVariant (
  chromosome (int),
  Golden Path position (int)
)

Return Value

All methods return a map of name/value pairs (e.g. a Perl hash or Java Map). Data items are variable, and can be enumerated; value types are both simple scalars and more complex nested types.

The following keys are the keys for each data type:

• Gene
  • searchTerm
  • geneName
  • geneAlternateNames
  • geneSymbol
  • geneAlternateSymbols
  • geneRelatedPathways
  • geneRelatedDiseases
  • geneRelatedDrugs
  • geneRelatedPhenotypeDatasets
  • geneCytogeneticLocation
• Drug
  • searchTerm
  • drugName
  • drugGenericNames
  • drugTradeNames
  • drugVaClassifications
  • drugRelatedPathways
  • drugRelatedGenes
  • drugRelatedDiseases
  • drugRelatedPhenotypeDatasets
  • drugStructures
• Disease
  • searchTerm
  • diseaseName
  • diseaseAlternateNames
  • diseaseRelatedPathways
  • diseaseRelatedGenes
  • diseaseRelatedDrugs
  • diseaseRelatedPhenotypeDatasets
• Publication
  • searchTerm
  • publicationName
  • publicationAuthors
  • publicationJournal
  • publicationYear
  • publicationVolume
  • publicationMonth
  • publicationPage
  • publicationAbstract
  • publicationKeywords
  • publicationGrantIds
  • publicationCitation
  • publicationAnnotationCategories
  • publicationAnnotationCrossReference
  • publicationAnnotationRelationships
  • publicationAnnotationDataCrossReferences
• Variant
  • searchTerm
  • variantReportIsSynonymous
  • variantReportVariantType
  • variantReportPosition
  • variantReportFeatureType
  • variantReportGeneSymbol
  • variantReportVariantSampleSize
  • variantReportHasPhenotypeData
  • variantReportPostFlankSequence
  • variantReportAssayTypes
  • variantReportPreFlankSequence
  • variantReportAlleles
  • variantReportGeneId
  • variantReportVariantFrequencies
  • variantReportStrand
  • variantReportIsPooled
  • variantReportRelatedPhenotypeDatasets