Clinical Annotations
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Variant Annotations
PharmGKB variant annotations provide information about variant-drug pairs based on individual PubMed publications. Each annotation represents information from a single paper and the goal is to report the information that the author states, not an interpretation of the paper. The PMID for supporting PubMed publications is found in the "Evidence" field.
Information presented, including study size, allele frequencies and statistics is taken directly from the publication. However, if the author does not correct p-values in cases of multiple hypotheses, curators may apply a Bonferroni correction. Curators attempt to report study size based on the actual number of participants used for the calculation of the association statistics, so the number may vary slightly from what is reported in the abstract of the paper. OMB Race Category information is derived from the paper and mapped to standardized categories. Category definitions may be found by clicking on the "OMB Race Category" link.
There are 3 annotations for this variant. Register or sign in to see them.
There are 1 disease-related annotations for this variant. Register or sign in to see them.
Connected Diseases
| Evidence | Disease |
|---|---|
| Precursor Cell Lymphoblastic Leukemia-Lymphoma |
Publications related to rs4149081 at chr12:21378021: 1
| Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects. Journal of clinical oncology : official journal of the American Society of Clinical Oncology. 2009. Treviño Lisa R, et al. [Article:19901119@PubMed] |
Cross-References
- UCSC Golden Path:
- chr12:21378021
- dbSNP:
- rs4149081
- HapMap:
- rs4149081
- JSNP:
- ssj0003215
Platform Availability
- Affymetrix
- Illumina